A C D E F G H I L M O P R S T U V W 

A

addPatient(String) - Method in interface org.phenotips.data.rest.PatientsResource
Import a new patient from its JSON representation.
Alternative - Class in org.phenotips.data.rest.model
Java class for Alternative complex type.
Alternative() - Constructor for class org.phenotips.data.rest.model.Alternative
 
Alternatives - Class in org.phenotips.data.rest.model
Java class for anonymous complex type.
Alternatives() - Constructor for class org.phenotips.data.rest.model.Alternatives
 
anies - Variable in class org.phenotips.data.rest.model.Patient
 
assignConsents(String, String) - Method in interface org.phenotips.data.rest.PatientConsentResource
For setting a set of consents at the same time.

C

createAlternative(String, UriInfo) - Method in interface org.phenotips.data.rest.DomainObjectFactory
Create the REST representation for a link to a Patient.
createAlternative() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of Alternative
createAlternatives(List<String>, UriInfo) - Method in interface org.phenotips.data.rest.DomainObjectFactory
Create the REST representation for a list of links to Patients.
createAlternatives() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of Alternatives
createdBy - Variable in class org.phenotips.data.rest.model.PatientSummary
 
createdOn - Variable in class org.phenotips.data.rest.model.PatientSummary
 
createLink() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of Link
createLinkCollection() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of LinkCollection
createPatient() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of Patient
createPatients() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of Patients
createPatientSummary(Patient, UriInfo) - Method in interface org.phenotips.data.rest.DomainObjectFactory
Create the REST representation for a Patient's summary, starting from an actual Patient object.
createPatientSummary(Object[], UriInfo) - Method in interface org.phenotips.data.rest.DomainObjectFactory
Create the REST representation for a Patient's summary, starting from the raw values needed for the summary.
createPatientSummary() - Method in class org.phenotips.data.rest.model.ObjectFactory
Create an instance of PatientSummary

D

DateTimeAdapter - Class in org.phenotips.data.rest
Uses JodaTime's DateTime for representing dates in REST resources instead of JAXB's default, XMLGregorianCalendar.
DateTimeAdapter() - Constructor for class org.phenotips.data.rest.DateTimeAdapter
 
deletePatient(String) - Method in interface org.phenotips.data.rest.PatientByExternalIdResource
Delete a patient record, identified by its given "external" identifier.
deletePatient(String) - Method in interface org.phenotips.data.rest.PatientResource
Delete a patient record, identified by its internal PhenoTips identifier.
DomainObjectFactory - Interface in org.phenotips.data.rest
Factory class for generating REST representations of various types of entities.

E

eid - Variable in class org.phenotips.data.rest.model.PatientSummary
 

F

FAMILY - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a family.

G

getAnies() - Method in class org.phenotips.data.rest.model.Patient
Gets the value of the anies property.
getConsents(String) - Method in interface org.phenotips.data.rest.PatientConsentResource
Retrieves a list of all consents for a given patient.
getCreatedBy() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the createdBy property.
getCreatedOn() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the createdOn property.
getEid() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the eid property.
getHref() - Method in class org.phenotips.data.rest.model.Link
Gets the value of the href property.
getHrefLang() - Method in class org.phenotips.data.rest.model.Link
Gets the value of the hrefLang property.
getId() - Method in class org.phenotips.data.rest.model.Alternative
Gets the value of the id property.
getId() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the id property.
getLastModifiedBy() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the lastModifiedBy property.
getLastModifiedOn() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the lastModifiedOn property.
getLinks() - Method in class org.phenotips.data.rest.model.LinkCollection
Gets the value of the links property.
getPatient(String) - Method in interface org.phenotips.data.rest.PatientByExternalIdResource
Retrieve a patient record, identified by its given "external" identifier, in its JSON representation.
getPatient(String) - Method in interface org.phenotips.data.rest.PatientResource
Retrieve a patient record, identified by its internal PhenoTips identifier, in its JSON representation.
getPatients() - Method in class org.phenotips.data.rest.model.Alternatives
Gets the value of the patients property.
getPatientSummaries() - Method in class org.phenotips.data.rest.model.Patients
Gets the value of the patientSummaries property.
getRel() - Method in class org.phenotips.data.rest.model.Link
Gets the value of the rel property.
getType() - Method in class org.phenotips.data.rest.model.Link
Gets the value of the type property.
getVersion() - Method in class org.phenotips.data.rest.model.PatientSummary
Gets the value of the version property.
grantConsent(String, String) - Method in interface org.phenotips.data.rest.PatientConsentResource
For granting a single consent in a patient record.

H

HISTORY - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to the history of a resource.
href - Variable in class org.phenotips.data.rest.model.Link
 
hrefLang - Variable in class org.phenotips.data.rest.model.Link
 

I

id - Variable in class org.phenotips.data.rest.model.Alternative
 
id - Variable in class org.phenotips.data.rest.model.PatientSummary
 

L

lastModifiedBy - Variable in class org.phenotips.data.rest.model.PatientSummary
 
lastModifiedOn - Variable in class org.phenotips.data.rest.model.PatientSummary
 
Link - Class in org.phenotips.data.rest.model
Java class for Link complex type.
Link() - Constructor for class org.phenotips.data.rest.model.Link
 
LinkCollection - Class in org.phenotips.data.rest.model
Java class for LinkCollection complex type.
LinkCollection() - Constructor for class org.phenotips.data.rest.model.LinkCollection
 
links - Variable in class org.phenotips.data.rest.model.LinkCollection
 
listPatients(Integer, Integer, String, String) - Method in interface org.phenotips.data.rest.PatientsResource
 

M

marshal(DateTime) - Method in class org.phenotips.data.rest.DateTimeAdapter
 

O

ObjectFactory - Class in org.phenotips.data.rest.model
This object contains factory methods for each Java content interface and Java element interface generated in the org.phenotips.data.rest.model package.
ObjectFactory() - Constructor for class org.phenotips.data.rest.model.ObjectFactory
Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.phenotips.data.rest.model
org.phenotips.data.rest - package org.phenotips.data.rest
 
org.phenotips.data.rest.model - package org.phenotips.data.rest.model
 

P

Patient - Class in org.phenotips.data.rest.model
Java class for Patient complex type.
Patient() - Constructor for class org.phenotips.data.rest.model.Patient
 
PATIENT_RECORD - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a patient record.
PatientByExternalIdResource - Interface in org.phenotips.data.rest
Resource for working with patient records, identified by their given "external" identifier.
PatientConsentResource - Interface in org.phenotips.data.rest
Resource for working with patient records, identified by their internal PhenoTips identifier.
PatientResource - Interface in org.phenotips.data.rest
Resource for working with patient records, identified by their internal PhenoTips identifier.
patients - Variable in class org.phenotips.data.rest.model.Alternatives
 
Patients - Class in org.phenotips.data.rest.model
Java class for anonymous complex type.
Patients() - Constructor for class org.phenotips.data.rest.model.Patients
 
PatientsResource - Interface in org.phenotips.data.rest
Root resource for working with patient records.
patientSummaries - Variable in class org.phenotips.data.rest.model.Patients
 
PatientSummary - Class in org.phenotips.data.rest.model
Java class for PatientSummary complex type.
PatientSummary() - Constructor for class org.phenotips.data.rest.model.PatientSummary
 
PEDIGREE - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a pedigree.

R

rel - Variable in class org.phenotips.data.rest.model.Link
 
Relations - Class in org.phenotips.data.rest
Common relation types used for PhenoTips data.
revokeConsent(String, String) - Method in interface org.phenotips.data.rest.PatientConsentResource
For revoking a single consent in a patient record.

S

SEARCH - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a search service for the current type of resource.
SELF - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to the resource that returned the current representation.
setCreatedBy(String) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the createdBy property.
setCreatedOn(DateTime) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the createdOn property.
setEid(String) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the eid property.
setHref(String) - Method in class org.phenotips.data.rest.model.Link
Sets the value of the href property.
setHrefLang(String) - Method in class org.phenotips.data.rest.model.Link
Sets the value of the hrefLang property.
setId(String) - Method in class org.phenotips.data.rest.model.Alternative
Sets the value of the id property.
setId(String) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the id property.
setLastModifiedBy(String) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the lastModifiedBy property.
setLastModifiedOn(DateTime) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the lastModifiedOn property.
setRel(String) - Method in class org.phenotips.data.rest.model.Link
Sets the value of the rel property.
setType(String) - Method in class org.phenotips.data.rest.model.Link
Sets the value of the type property.
setVersion(String) - Method in class org.phenotips.data.rest.model.PatientSummary
Sets the value of the version property.
SUGGEST - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a suggest (automatic search) service for the current type of resource.

T

type - Variable in class org.phenotips.data.rest.model.Link
 

U

unmarshal(String) - Method in class org.phenotips.data.rest.DateTimeAdapter
 
updatePatient(String, String) - Method in interface org.phenotips.data.rest.PatientByExternalIdResource
Update a patient record, identified by its given "external" identifier, from its JSON representation.
updatePatient(String, String) - Method in interface org.phenotips.data.rest.PatientResource
Update a patient record, identified by its internal PhenoTips identifier, from its JSON representation.

V

version - Variable in class org.phenotips.data.rest.model.PatientSummary
 
VOCABULARY - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a vocabulary.
VOCABULARY_TERM - Static variable in class org.phenotips.data.rest.Relations
Relation for links pointing to a vocabulary term.

W

withAnies(Object...) - Method in class org.phenotips.data.rest.model.Patient
 
withAnies(Collection<Object>) - Method in class org.phenotips.data.rest.model.Patient
 
withCreatedBy(String) - Method in class org.phenotips.data.rest.model.Patient
 
withCreatedBy(String) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withCreatedOn(DateTime) - Method in class org.phenotips.data.rest.model.Patient
 
withCreatedOn(DateTime) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withEid(String) - Method in class org.phenotips.data.rest.model.Patient
 
withEid(String) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withHref(String) - Method in class org.phenotips.data.rest.model.Link
 
withHrefLang(String) - Method in class org.phenotips.data.rest.model.Link
 
withId(String) - Method in class org.phenotips.data.rest.model.Alternative
 
withId(String) - Method in class org.phenotips.data.rest.model.Patient
 
withId(String) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withLastModifiedBy(String) - Method in class org.phenotips.data.rest.model.Patient
 
withLastModifiedBy(String) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withLastModifiedOn(DateTime) - Method in class org.phenotips.data.rest.model.Patient
 
withLastModifiedOn(DateTime) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.Alternative
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.Alternative
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.Alternatives
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.Alternatives
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.LinkCollection
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.LinkCollection
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.Patient
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.Patient
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.Patients
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.Patients
 
withLinks(Link...) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withLinks(Collection<Link>) - Method in class org.phenotips.data.rest.model.PatientSummary
 
withPatients(Alternative...) - Method in class org.phenotips.data.rest.model.Alternatives
 
withPatients(Collection<Alternative>) - Method in class org.phenotips.data.rest.model.Alternatives
 
withPatientSummaries(PatientSummary...) - Method in class org.phenotips.data.rest.model.Patients
 
withPatientSummaries(Collection<PatientSummary>) - Method in class org.phenotips.data.rest.model.Patients
 
withRel(String) - Method in class org.phenotips.data.rest.model.Link
 
withType(String) - Method in class org.phenotips.data.rest.model.Link
 
withVersion(String) - Method in class org.phenotips.data.rest.model.Patient
 
withVersion(String) - Method in class org.phenotips.data.rest.model.PatientSummary
 
A C D E F G H I L M O P R S T U V W 

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