Uses of Interface
org.phenotips.matchingnotification.match.PatientMatch

Packages that use PatientMatch

Package	Description
org.phenotips.matchingnotification
org.phenotips.matchingnotification.export
org.phenotips.matchingnotification.match
org.phenotips.matchingnotification.notification
org.phenotips.matchingnotification.storage

Uses of PatientMatch in org.phenotips.matchingnotification

Methods in org.phenotips.matchingnotification that return PatientMatch

Modifier and Type	Method and Description
PatientMatch	MatchingNotificationManager.addNote(Long matchId, String note) Saves note for a match that has the given matchId internal ID.
PatientMatch	MatchingNotificationManager.getMatch(Long matchId) Returns a match that has the given matchId internal ID.
PatientMatch	MatchingNotificationManager.saveComment(Long matchId, String comment) Saves comment for a match that has the given matchId internal ID.
PatientMatch	MatchingNotificationManager.setStatus(Long matchId, String status) Sets status for a match that has the given matchId internal ID.
PatientMatch	MatchingNotificationManager.setUserContacted(Long matchId, boolean isUserContacted) Marks all matches with ids in matchesIds as user-contacted or not.

Methods in org.phenotips.matchingnotification that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatch>	MatchingNotificationManager.saveIncomingMatches(List<? extends PatientSimilarityView> similarityViews, String patientId, String remoteId) Saves a list of matches that were found by a remote incoming request.
List<PatientMatch>	MatchingNotificationManager.saveOutgoingMatches(List<? extends PatientSimilarityView> similarityViews, String patientId, String remoteId) Saves a list of matches that were found by a remote outgoing request.

Uses of PatientMatch in org.phenotips.matchingnotification.export

Method parameters in org.phenotips.matchingnotification.export with type arguments of type PatientMatch

Modifier and Type	Method and Description
org.json.JSONObject	PatientMatchExport.toJSON(List<PatientMatch> matches)

Uses of PatientMatch in org.phenotips.matchingnotification.match

Methods in org.phenotips.matchingnotification.match with parameters of type PatientMatch

Modifier and Type	Method and Description
boolean	PatientMatch.hasSameMatchData(PatientMatch other) Checks that matches are equivalent (see isEquivalent()) and that the match data is the same, meaning that scores are the same, phenotype/genotype is the same, etc.
boolean	PatientMatch.isEquivalent(PatientMatch other) Checks if other is equivalent to this.

Uses of PatientMatch in org.phenotips.matchingnotification.notification

Methods in org.phenotips.matchingnotification.notification that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
Collection<PatientMatch>	PatientMatchEmail.getMatches()
Collection<PatientMatch>	PatientMatchNotificationResponse.getPatientMatches()

Methods in org.phenotips.matchingnotification.notification with parameters of type PatientMatch

Modifier and Type	Method and Description
PatientMatchEmail	PatientMatchNotifier.createUserEmail(PatientMatch match, String subjectPatientId, String subjectServerId, String customEmailText, String customEmailSubject) Generates a email to be sent from the current user to the owner of the subjectPatientId on subjectServerId describing the given match.

Method parameters in org.phenotips.matchingnotification.notification with type arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatchEmail>	PatientMatchNotifier.createAdminEmailsToLocalUsers(List<PatientMatch> matches, Map<Long,List<String>> matchesIds) Build a list of emails based on the given matches.
void	PatientMatchNotificationResponse.setPatientMatches(Collection<PatientMatch> matches)

Uses of PatientMatch in org.phenotips.matchingnotification.storage

Methods in org.phenotips.matchingnotification.storage that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatch>	MatchStorageManager.loadMatches(String patientId, double score, double phenScore, double genScore, boolean onlyCurrentUserAccessible, Timestamp fromDate, Timestamp toDate) Loads matches filtered by the parameters.
List<PatientMatch>	MatchStorageManager.loadMatchesByIds(Set<Long> matchesIds) Load all matches with ids in matchesIds.
List<PatientMatch>	MatchStorageManager.saveLocalMatches(Collection<? extends PatientSimilarityView> similarityViews, String patientId) Saves a list of local matches.
List<PatientMatch>	MatchStorageManager.saveRemoteMatches(Collection<? extends PatientSimilarityView> similarityViews, String patientId, String serverId, boolean isIncoming) Saves a list of matches that were found by a remote outgoing/incoming request.
Collection<PatientMatch>	MatchStorageManager.updateNotificationHistory(PatientMatch match, org.json.JSONObject notificationRecord) Updates a notification history JSON log string with new notification record.

Methods in org.phenotips.matchingnotification.storage with parameters of type PatientMatch

Modifier and Type	Method and Description
boolean	MatchStorageManager.addNote(PatientMatch match, String note) Saves a note to a match.
boolean	MatchStorageManager.saveComment(PatientMatch match, String comment) Saves comment to a match.
boolean	MatchStorageManager.setStatus(PatientMatch match, String status) Sets status to a match.
boolean	MatchStorageManager.setUserContacted(PatientMatch match, boolean isUserContacted) Marks a match as user-contacted or not.
boolean	MatchStorageManager.updateNotes(PatientMatch match, String note) Updates match notes string property with new note record.
Collection<PatientMatch>	MatchStorageManager.updateNotificationHistory(PatientMatch match, org.json.JSONObject notificationRecord) Updates a notification history JSON log string with new notification record.