Uses of Interface
org.phenotips.matchingnotification.match.PatientMatch

Packages that use PatientMatch

Package	Description
org.phenotips.matchingnotification
org.phenotips.matchingnotification.export
org.phenotips.matchingnotification.finder
org.phenotips.matchingnotification.match
org.phenotips.matchingnotification.notification
org.phenotips.matchingnotification.storage

Uses of PatientMatch in org.phenotips.matchingnotification

Methods in org.phenotips.matchingnotification that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatch>	MatchingNotificationManager.saveComment(Set<Long> matchesIds, String comment) Saves comment to all matches with ids in matchesIds to a passed comment string.

Uses of PatientMatch in org.phenotips.matchingnotification.export

Method parameters in org.phenotips.matchingnotification.export with type arguments of type PatientMatch

Modifier and Type	Method and Description
org.json.JSONObject	PatientMatchExport.toJSON(List<PatientMatch> matches)

Uses of PatientMatch in org.phenotips.matchingnotification.finder

Methods in org.phenotips.matchingnotification.finder that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatch>	MatchFinder.findMatches(List<String> patientIds, Set<String> serverIds, boolean onlyUpdatedAfterLastRun) Finds matches for a given patient updated after the last time the match finder was run.

Uses of PatientMatch in org.phenotips.matchingnotification.match

Methods in org.phenotips.matchingnotification.match with parameters of type PatientMatch

Modifier and Type	Method and Description
boolean	PatientMatch.isEquivalent(PatientMatch other) Checks if other is equivalent to this.

Uses of PatientMatch in org.phenotips.matchingnotification.notification

Methods in org.phenotips.matchingnotification.notification that return PatientMatch

Modifier and Type	Method and Description
PatientMatch	PatientMatchNotificationResponse.getPatientMatch()

Methods in org.phenotips.matchingnotification.notification that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
Collection<PatientMatch>	PatientMatchEmail.getMatches()

Methods in org.phenotips.matchingnotification.notification with parameters of type PatientMatch

Modifier and Type	Method and Description
PatientMatchEmail	PatientMatchNotifier.createUserEmail(PatientMatch match, String subjectPatientId, String subjectServerId, String customEmailText, String customEmailSubject) Generates a email to be sent from the current user to the owner of the subjectPatientId on subjectServerId describing the given match.

Method parameters in org.phenotips.matchingnotification.notification with type arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatchEmail>	PatientMatchNotifier.createAdminEmailsToLocalUsers(List<PatientMatch> matches, Map<Long,List<String>> matchesIds) Build a list of emails based on the given matches.

Uses of PatientMatch in org.phenotips.matchingnotification.storage

Methods in org.phenotips.matchingnotification.storage that return types with arguments of type PatientMatch

Modifier and Type	Method and Description
List<PatientMatch>	MatchStorageManager.getMatchesToBePlacedIntoNotificationTable(List<PatientSimilarityView> matches) Converts a list of local SimilarityViews into a list of PatientMatches, keeping only those matches which should be saved into the notification table (i.e.
List<PatientMatch>	MatchStorageManager.loadMatches(double score, double phenScore, double genScore, boolean onlyCurrentUserAccessible, Timestamp fromDate, Timestamp toDate) Loads matches filtered by the parameters.
List<PatientMatch>	MatchStorageManager.loadMatchesBetweenPatients(String patientId1, String serverId1, String patientId2, String serverId2) Load all matches where reference/matched patient ID is same as one of parameters.
List<PatientMatch>	MatchStorageManager.loadMatchesByIds(Set<Long> matchesIds) Load all matches with ids in matchesIds.

Methods in org.phenotips.matchingnotification.storage with parameters of type PatientMatch

Modifier and Type	Method and Description
boolean	MatchStorageManager.updateNotes(PatientMatch match, String note) Updates match notes string property with new note record.
boolean	MatchStorageManager.updateNotificationHistory(PatientMatch match, org.json.JSONObject notificationRecord) Updates a notification history JSON log string with new notification record.

Method parameters in org.phenotips.matchingnotification.storage with type arguments of type PatientMatch

Modifier and Type	Method and Description
boolean	MatchStorageManager.addNote(List<PatientMatch> matches, String note) Saves a note to all matches in matches.
boolean	MatchStorageManager.saveComment(List<PatientMatch> matches, String comment) Saves comment to all matches in matches to a passed status string.
boolean	MatchStorageManager.saveLocalMatches(List<PatientMatch> matches, String patientId) Saves a list of local matches.
boolean	MatchStorageManager.setNotifiedStatus(List<PatientMatch> matches, boolean isNotified) Marks all matches in matches as notified or not notified.
boolean	MatchStorageManager.setStatus(List<PatientMatch> matches, String status) Sets status to all matches in matches to a passed status string.
boolean	MatchStorageManager.setUserContacted(List<PatientMatch> matches, boolean isUserContacted) Marks all matches with ids in matchesIds as user-contacted or not.