org.phenotips.studies.family.migrations

Class R71496PhenoTips2339DataMigration

java.lang.Object

com.xpn.xwiki.store.migration.hibernate.AbstractHibernateDataMigration

org.phenotips.studies.family.migrations.R71496PhenoTips2339DataMigration

All Implemented Interfaces:

com.xpn.xwiki.store.migration.DataMigration, com.xpn.xwiki.store.migration.hibernate.HibernateDataMigration, com.xpn.xwiki.store.XWikiHibernateBaseStore.HibernateCallback<Object>

@Component
@Named(value="R71496-PT-2339")
@Singleton
public class R71496PhenoTips2339DataMigration
extends com.xpn.xwiki.store.migration.hibernate.AbstractHibernateDataMigration
implements com.xpn.xwiki.store.XWikiHibernateBaseStore.HibernateCallback<Object>

Migration for PhenoTips issue PT-2339: support for negative phenotypes and phenotype details in pedigree editor. In the past, pedigree editor could have ignored negative phenotypes and phenotype details, since they never propagated back to PhenoTips. Now that they do pedigree should support the same data as PT, so that no data is lost when data is moved form PT to pedigree and then back to PT.

Since:

1.3M3

Version:

$Id: 1912906790e7bdc5a1f1de3af48603a58946195a $

Field Summary

Fields inherited from class com.xpn.xwiki.store.migration.hibernate.AbstractHibernateDataMigration

componentManager

Constructor Summary

Constructors

Constructor and Description
R71496PhenoTips2339DataMigration()

Method Summary

Methods

Modifier and Type	Method and Description
Object	doInHibernate(org.hibernate.Session session)
String	getDescription()
com.xpn.xwiki.store.migration.XWikiDBVersion	getVersion()
void	hibernateMigrate()

Methods inherited from class com.xpn.xwiki.store.migration.hibernate.AbstractHibernateDataMigration

getLiquibaseChangeLog, getName, getPreHibernateLiquibaseChangeLog, getStore, getXWikiContext, migrate, shouldExecute

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

R71496PhenoTips2339DataMigration

public R71496PhenoTips2339DataMigration()

Method Detail

getDescription

public String getDescription()

Specified by:

getDescription in interface com.xpn.xwiki.store.migration.DataMigration

getVersion

public com.xpn.xwiki.store.migration.XWikiDBVersion getVersion()

Specified by:

getVersion in interface com.xpn.xwiki.store.migration.DataMigration

hibernateMigrate

public void hibernateMigrate()
                      throws com.xpn.xwiki.store.migration.DataMigrationException,
                             com.xpn.xwiki.XWikiException

Specified by:

hibernateMigrate in class com.xpn.xwiki.store.migration.hibernate.AbstractHibernateDataMigration

Throws:

com.xpn.xwiki.store.migration.DataMigrationException

com.xpn.xwiki.XWikiException

doInHibernate

public Object doInHibernate(org.hibernate.Session session)
                     throws org.hibernate.HibernateException,
                            com.xpn.xwiki.XWikiException

Specified by:

doInHibernate in interface com.xpn.xwiki.store.XWikiHibernateBaseStore.HibernateCallback<Object>

Throws:

org.hibernate.HibernateException

com.xpn.xwiki.XWikiException