4.0.0 org.phenomecentral phenomecentral-parent 1.2-rc-4 phenomecentral-war PhenomeCentral - War package war org.phenomecentral:phenomecentral-ui org.phenotips phenotips-base-war ${phenotips.version} war antlr antlr net.sourceforge.htmlcleaner htmlcleaner org.xwiki.platform xwiki-platform-oldcore ${xwiki.version} org.codehaus.groovy groovy-all org.xwiki.platform xwiki-platform-component-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rest-server ${xwiki.version} runtime org.xwiki.platform xwiki-platform-classloader-xwiki ${xwiki.version} runtime org.xwiki.platform xwiki-platform-container-servlet ${xwiki.version} runtime org.xwiki.commons xwiki-commons-extension-handler-jar ${xwiki.version} runtime org.xwiki.platform xwiki-platform-extension-handler-xar ${xwiki.version} runtime org.xwiki.platform xwiki-platform-extension-script ${xwiki.version} runtime org.xwiki.commons xwiki-commons-extension-repository-maven ${xwiki.version} runtime org.xwiki.commons xwiki-commons-extension-repository-xwiki ${xwiki.version} runtime org.xwiki.platform xwiki-platform-extension-cluster ${xwiki.version} runtime org.xwiki.platform xwiki-platform-extension-distribution ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-box ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-comment ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-html ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-id ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-message ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-toc ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-macro-content ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-wikimacro-store ${xwiki.version} runtime org.xwiki.platform xwiki-platform-dashboard-macro ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-code ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-container ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-gallery ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-include ${xwiki.version} runtime org.xwiki.platform xwiki-platform-display-macro ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-useravatar ${xwiki.version} runtime org.xwiki.platform xwiki-platform-rendering-macro-velocity ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-doxia ${xwiki.version} runtime plexus-container-default org.codehaus.plexus org.xwiki.rendering xwiki-rendering-syntax-xwiki20 ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-xwiki21 ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-xhtml ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-html5 ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-html ${xwiki.version} runtime org.xwiki.rendering xwiki-rendering-syntax-plain ${xwiki.version} runtime org.xwiki.platform xwiki-platform-captcha ${xwiki.version} runtime org.xwiki.platform xwiki-platform-crypto-script ${xwiki.version} runtime org.xwiki.commons xwiki-commons-crypto-store-filesystem ${xwiki.version} runtime org.xwiki.platform xwiki-platform-crypto-store-wiki ${xwiki.version} runtime org.xwiki.platform xwiki-platform-csrf ${xwiki.version} runtime org.xwiki.platform xwiki-platform-xml-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-store-filesystem-attachments ${xwiki.version} runtime org.xwiki.platform xwiki-platform-uiextension-api ${xwiki.version} runtime org.xwiki.platform xwiki-platform-security-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-skin-skinx ${xwiki.version} runtime org.xwiki.platform xwiki-platform-zipexplorer ${xwiki.version} runtime org.xwiki.platform xwiki-platform-mail-send-storage ${xwiki.version} runtime org.xwiki.platform xwiki-platform-mailsender ${xwiki.version} runtime org.xwiki.platform xwiki-platform-jodatime ${xwiki.version} runtime org.xwiki.commons xwiki-commons-diff-script ${xwiki.version} runtime org.xwiki.commons xwiki-commons-blame-script ${xwiki.version} runtime org.xwiki.commons xwiki-commons-logging-logback ${xwiki.version} runtime org.xwiki.platform xwiki-platform-logging-script ${xwiki.version} runtime org.slf4j jcl-over-slf4j runtime org.slf4j log4j-over-slf4j runtime org.xwiki.platform xwiki-platform-configuration-default ${xwiki.version} runtime org.xwiki.platform xwiki-platform-security-bridge ${xwiki.version} runtime org.xwiki.platform xwiki-platform-localization-source-legacy ${xwiki.version} runtime org.xwiki.platform xwiki-platform-localization-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-localization-macro ${xwiki.version} runtime org.xwiki.platform xwiki-platform-url-scheme-standard ${xwiki.version} runtime org.xwiki.commons xwiki-commons-filter-stream-xml ${xwiki.version} runtime org.xwiki.platform xwiki-platform-filter-instance-oldcore ${xwiki.version} runtime org.xwiki.platform xwiki-platform-filter-instance-extension ${xwiki.version} runtime org.xwiki.platform xwiki-platform-filter-instance-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-filter-stream-xar ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-default ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-template-default ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-template-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-user-default ${xwiki.version} runtime org.xwiki.platform xwiki-platform-wiki-user-script ${xwiki.version} runtime org.xwiki.platform xwiki-platform-lesscss-default ${xwiki.version} runtime org.xwiki.platform xwiki-platform-ldap-authenticator ${xwiki.version} org.xwiki.platform xwiki-platform-resource-servlet ${xwiki.version} org.xwiki.platform xwiki-platform-refactoring-default ${xwiki.version} org.xwiki.contrib letsencrypt 1.1 org.phenotips component-registry ${phenotips.version} org.phenotips gene-panels-api ${phenotips.version} org.phenotips gene-panels-rest ${phenotips.version} org.phenotips vocabularies-api ${phenotips.version} org.phenotips vocabularies-rest ${phenotips.version} org.phenotips vocabulary-hpo-api ${phenotips.version} org.phenotips vocabulary-hpo-annotations ${phenotips.version} org.phenotips vocabulary-hpo-translation-french ${phenotips.version} org.phenotips vocabulary-hpo-translation-german ${phenotips.version} org.phenotips vocabulary-hpo-translation-italian ${phenotips.version} org.phenotips vocabulary-hpo-translation-russian ${phenotips.version} org.phenotips vocabulary-hpo-translation-spanish ${phenotips.version} org.phenotips vocabulary-chebi-api ${phenotips.version} org.phenotips vocabulary-omim-api ${phenotips.version} org.phenotips vocabulary-hgnc-api ${phenotips.version} org.phenotips vocabulary-ethnicity-api ${phenotips.version} org.phenotips vocabulary-ordo-api ${phenotips.version} org.phenotips vocabulary-oncotree-api ${phenotips.version} org.phenotips patient-contacts ${phenotips.version} org.phenotips patient-data-default-impl ${phenotips.version} org.phenotips patient-data-rest ${phenotips.version} org.phenotips patient-data-migrations ${phenotips.version} org.phenotips patient-data-indexing ${phenotips.version} org.phenotips phenotips-data-export-api ${phenotips.version} org.phenotips phenotips-authorization ${phenotips.version} org.phenotips phenotips-security-bridge ${phenotips.version} org.phenotips phenotips-crypto-api ${phenotips.version} org.phenotips phenotips-crypto-xproperty ${phenotips.version} org.phenotips entity-access-rules-api ${phenotips.version} org.phenotips patient-access-rules-api ${phenotips.version} org.phenotips patient-access-rules-migrations ${phenotips.version} org.phenotips entity-access-rules-rest ${phenotips.version} org.phenotips patient-measurements-api ${phenotips.version} org.phenotips patient-measurements-migrations ${phenotips.version} org.phenotips users-api ${phenotips.version} org.phenotips users-rest ${phenotips.version} org.phenotips phenotips-studies-api ${phenotips.version} org.phenotips phenotips-consents-api ${phenotips.version} org.phenotips phenotips-consents-rest ${phenotips.version} org.phenotips xwiki-platform-users-api ${phenotips.version} org.phenotips xwiki-platform-users-wiki ${phenotips.version} org.phenotips application-configuration-api ${phenotips.version} org.phenotips application-configuration-migrations ${phenotips.version} org.phenotips patient-tools ${phenotips.version} org.phenotips ncbieutils-services-api ${phenotips.version} org.phenotips obo2solr ${phenotips.version} org.phenotips patient-data-sharing-push-api ${phenotips.version} org.phenotips patient-data-sharing-receiver-api ${phenotips.version} org.phenotips specificity-meter-api ${phenotips.version} org.phenotips phenotips-navigation-api ${phenotips.version} org.phenotips phenotips-pedigree-api ${phenotips.version} org.phenotips phenotips-skin-api ${phenotips.version} org.phenotips phenotips-widgets-api ${phenotips.version} org.phenotips jodatime-service ${phenotips.version} org.phenotips storage-migrators-api ${phenotips.version} org.phenotips storage-migrators-attachments-migrator ${phenotips.version} org.phenotips storage-migrators-attachments-database ${phenotips.version} org.phenotips storage-migrators-attachments-filesystem ${phenotips.version} org.phenotips diagnosis-suggestion-api ${phenotips.version} org.phenotips phenotype-suggest-service-api ${phenotips.version} org.phenotips phenotips-concurrency-locking ${phenotips.version} org.phenotips phenotips-proxy-authentication ${phenotips.version} org.phenotips pingback-common 1.3 org.phenotips pingback-client-api 1.3 org.phenotips family-studies-api ${phenotips.version} org.phenotips family-studies-migrations ${phenotips.version} org.phenotips family-studies-rest ${phenotips.version} org.phenotips patient-similarity-data-api ${patientNetwork.version} org.phenotips patient-similarity-data-rest ${patientNetwork.version} org.phenotips patient-similarity-data-impl ${patientNetwork.version} org.phenotips patient-network-access-rules ${patientNetwork.version} org.phenotips patient-similarity-search ${patientNetwork.version} org.phenotips matching-notification-api ${patientNetwork.version} org.phenotips matching-notification-resources ${patientNetwork.version} org.phenotips matching-notification-migrations ${patientNetwork.version} org.phenotips matching-notification-rest ${patientNetwork.version} org.phenotips matching-notification-resources ${patientNetwork.version} org.phenotips remote-matching-core-server ${remoteMatching.version} org.phenotips remote-matching-core-client ${remoteMatching.version} org.phenotips remote-matching-core-rest ${remoteMatching.version} org.phenotips remote-matching-core-common ${remoteMatching.version} org.phenotips remote-matching-core-metrics ${remoteMatching.version} org.phenotips remote-matching-core-hibernate ${remoteMatching.version} org.phenotips remote-matching-core-api ${remoteMatching.version} ${project.groupId} phenomecentral-ui ${project.version} xar org.apache.maven.plugins maven-remote-resources-plugin xwiki-configuration-resources xwiki-platform-tool-configuration-resources process org.xwiki.platform:xwiki-platform-tool-configuration-resources:${xwiki.version} jdbc:hsqldb:file:${environment.permanentDirectory}/database/xwiki_db;shutdown=true;hsqldb.cache_size=50000;hsqldb.script_format=3;hsqldb.nio_max_size=512;hsqldb.lob_file_scale=16;hsqldb.default_table_type=cached;hsqldb.tx=mvcc sa org.hsqldb.jdbcDriver org.hibernate.dialect.HSQLDialect xwiki.hbm.xml feeds.hbm.xml instance.hbm.xml,mailsender.hbm.xml \ com.xpn.xwiki.monitor.api.MonitorPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.LinkExtensionPlugin,\ com.xpn.xwiki.plugin.mail.MailPlugin,\ com.xpn.xwiki.plugin.packaging.PackagePlugin,\ com.xpn.xwiki.plugin.svg.SVGPlugin,\ com.xpn.xwiki.plugin.fileupload.FileUploadPlugin,\ com.xpn.xwiki.plugin.image.ImagePlugin,\ com.xpn.xwiki.plugin.zipexplorer.ZipExplorerPlugin,\ com.xpn.xwiki.plugin.diff.DiffPlugin,\ com.xpn.xwiki.plugin.rightsmanager.RightsManagerPlugin,\ com.xpn.xwiki.plugin.jodatime.JodaTimePlugin,\ com.xpn.xwiki.plugin.mailsender.MailSenderPlugin 0 0 0 phenotips colibri UTF-8 xwiki.plugin.watchlist.automaticwatch=none xwiki.authentication.group.allgroupimplicit=1 xwiki.authentication.rightsclass=org.phenotips.security.authorization.ModularRightServiceImpl xwiki.section.edit=0 xwiki.backlinks=0 xwiki.showviewaction=0 xwiki.defaultweb=data xwiki.usedefaultweb=1 xwiki.usedefaultaction=0 xwiki.monitor=0 xwiki.authentication.loginpage=/login/PhenomeCentral/login xwiki.authentication.loginsubmitpage=/loginsubmit/PhenomeCentral/login xwiki.store.attachment.hint=file xwiki.store.attachment.versioning.hint=file xwiki.store.attachment.recyclebin.hint=file xwiki.store.cache.capacity=15000 /var/lib/phenotips/ model.reference.default.space=data extension.repositories=maven-central:maven:https://nexus.phenotips.org/nexus/content/groups/public/ extension.repositories=maven-phenotips:maven:https://nexus.phenotips.org/nexus/content/repositories/releases/ extension.repositories=phenotips.org:xwiki:https://phenotips.org/rest/ rendering.transformations=macro activeinstalls.pingURL=https://stats.phenotips.org activeinstalls.ipFetchURL=https://phenotips.org/get/Stats/Id org.apache.maven.plugins maven-war-plugin ${project.build.directory}/maven-shared-archive-resources/META-INF META-INF ${project.build.directory}/maven-shared-archive-resources WEB-INF xwiki.cfg xwiki.properties hibernate.cfg.xml WEB-INF/lib/commons-logging-*.jar, %regex[WEB-INF/lib/log4j-(?!over-slf4j).*.jar], WEB-INF/lib/activation-*.jar, WEB-INF/lib/batik-js-*.jar, WEB-INF/lib/commons-logging-*.jar, WEB-INF/lib/jaxb-impl-*.jar, WEB-INF/lib/jaxb-api-*.jar, WEB-INF/lib/stax-api-*.jar, resources/js/xwiki/wysiwyg/** org.phenotips phenotips-base-war war / org.phenotips matching-notification-resources jar org.apache.maven.plugins maven-enforcer-plugin enforce-banned-dependencies enforce org.jmock:* junit:* javax.servlet:servlet-api:*:*:compile org.jmock:*:*:*:test junit:*:*:*:test