4.0.0 org.phenomecentral phenomecentral-parent 1.0-rc-6 phenomecentral-rpm rpm PhenomeCentral - RPM Distribution Distribution containing PhenomeCentral deployed under Tomcat, with mariadb for storage, as a RedHat (.rpm) package. ${project.build.directory}/pcwar ${project.build.directory}/phenotips ${data.path}/data /var/lib/phenotips/data ${project.groupId} phenomecentral-war ${project.version} war org.phenotips solr-configuration ${phenotips.version} jar true org.apache.maven.plugins maven-dependency-plugin unzip-phenomecentral process-resources unpack ${project.groupId} phenomecentral-war ${project.version} war **\/xwiki.cfg,**/xwiki.properties,**/hibernate.cfg.xml ${pcwar.path} org.apache.maven.plugins maven-remote-resources-plugin xwiki-configuration-resources xwiki-platform-tool-configuration-resources process org.xwiki.platform:xwiki-platform-tool-configuration-resources:${xwiki.version} jdbc:hsqldb:file:${environment.permanentDirectory}/database/xwiki_db;shutdown=true;hsqldb.cache_size=50000;hsqldb.script_format=3;hsqldb.nio_max_size=512;hsqldb.lob_file_scale=16;hsqldb.default_table_type=cached;hsqldb.tx=mvcc sa org.hsqldb.jdbcDriver org.hibernate.dialect.HSQLDialect xwiki.hbm.xml feeds.hbm.xml instance.hbm.xml \ com.xpn.xwiki.monitor.api.MonitorPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.LinkExtensionPlugin,\ com.xpn.xwiki.plugin.mail.MailPlugin,\ com.xpn.xwiki.plugin.packaging.PackagePlugin,\ com.xpn.xwiki.plugin.svg.SVGPlugin,\ com.xpn.xwiki.plugin.fileupload.FileUploadPlugin,\ com.xpn.xwiki.plugin.image.ImagePlugin,\ com.xpn.xwiki.plugin.zipexplorer.ZipExplorerPlugin,\ com.xpn.xwiki.plugin.diff.DiffPlugin,\ com.xpn.xwiki.plugin.rightsmanager.RightsManagerPlugin,\ com.xpn.xwiki.plugin.jodatime.JodaTimePlugin,\ com.xpn.xwiki.plugin.mailsender.MailSenderPlugin 0 0 0 colibri colibri UTF-8 xwiki.plugin.watchlist.automaticwatch=none xwiki.authentication.group.allgroupimplicit=1 xwiki.authentication.rightsclass=org.phenotips.security.authorization.ModularRightServiceImpl xwiki.section.edit=0 xwiki.backlinks=0 xwiki.showviewaction=0 xwiki.defaultweb=data xwiki.usedefaultweb=1 xwiki.usedefaultaction=0 xwiki.monitor=0 xwiki.authentication.loginpage=/PhenomeCentral/login xwiki.authentication.loginsubmitpage=/loginsubmit/PhenomeCentral/login xwiki.store.attachment.hint=file xwiki.store.attachment.versioning.hint=file xwiki.store.attachment.recyclebin.hint=file /var/lib/phenotips/ model.reference.default.space=data extension.repositories=maven-central:maven:https://nexus.phenotips.org/nexus/content/groups/public/ extension.repositories=maven-phenotips:maven:https://nexus.phenotips.org/nexus/content/repositories/releases/ extension.repositories=phenotips.org:xwiki:https://phenotips.org/rest/ rendering.transformations=macro activeinstalls.pingURL=https://stats.phenotips.org activeinstalls.ipFetchURL=https://phenotips.org/get/Stats/Id org.codehaus.mojo rpm-maven-plugin 2.1.5 true phenomecentral

The PhenomeCentral server packaged for Tomcat and mariadb

PhenomeCentral is a repository for clinicians and scientists working in the rare disorder community. PhenomeCentral encourages global scientific collaboration while respecting the privacy of patients profiled in this centralized database. Once users enter their patients' data, they are connected to other patient profiles within PhenomeCentral that share similar phenotypes and genotypes. Centre for Computational Medicine, Hospital for Sick Children (support@phenomecentral.org) AGPL 3.0 Applications/Science src/main/resources/phenomecentral.gif 750 644 tomcat tomcat java >= 0:1.8.0 tomcat unzip bc wget mariadb-server /var/lib/phenotips/webapp ${pcwar.path} /var/lib/phenotips/webapp/WEB-INF noreplace false ${project.build.outputDirectory}/ xwiki.cfg xwiki.properties hibernate.cfg.xml /var/lib/phenotips/next org.phenotips:solr-configuration /etc/tomcat/Catalina/localhost false ${project.build.outputDirectory}/context.xml ROOT.xml /var/lib/exomiser/scripts false src/main/resources/exomiser_cron.sh src/main/resources/exomiser_cron.py src/main/resources/exomiser_settings.txt /etc/cron.d false src/main/resources/exomiser.cron exomiser /var/lib/exomiser/scripts noreplace false src/main/resources/exomiser.credentials src/main/scripts/preinstall utf-8 src/main/scripts/postinstall utf-8 src/main/scripts/postremove utf-8