org.phenotips.ncbieutils

Interface NCBIEUtilsService

All Known Implementing Classes:

org.phenotips.ncbieutils.internal.AbstractSpecializedNCBIEUtilsAccessService, OmimAccessService, PubmedAccessService

public interface NCBIEUtilsService

Script service exposing a few services provided by the online NCBI Entrez Utilities webserver. Generic service for accessing the NCBI Entrez Utilities server. This is not exposed directly, but instances for specific databases can be obtained through NCBIEUtilsAccessService.get(String), available to scripts using $services.ncbi.get('dbname').

Since:

1.0M8 (functionality available since 1.0M1)

Version:

$Id: 704e3aa7235e5b10db1a7fb9802a0d8f5ac7a0db $

Method Summary

Methods

Modifier and Type	Method and Description
String	getCorrectedQuery(String query)
List<String>	getMatches(String query, int rows, int start)
String	getName(String id)
Map<String,String>	getNames(List<String> idList)
List<Map<String,Object>>	getSuggestions(String query)
List<Map<String,Object>>	getSuggestions(String query, int rows, int start)
String	getSuggestionsXML(String query)
String	getSuggestionsXML(String query, int rows, int start)
List<Map<String,Object>>	getSummaries(List<String> idList)

Method Detail

getSuggestions

List<Map<String,Object>> getSuggestions(String query)

getSuggestions

List<Map<String,Object>> getSuggestions(String query,
                                      int rows,
                                      int start)

getSuggestionsXML

String getSuggestionsXML(String query)

getSuggestionsXML

String getSuggestionsXML(String query,
                       int rows,
                       int start)

getName

String getName(String id)

getNames

Map<String,String> getNames(List<String> idList)

getCorrectedQuery

String getCorrectedQuery(String query)

getMatches

List<String> getMatches(String query,
                      int rows,
                      int start)

getSummaries

List<Map<String,Object>> getSummaries(List<String> idList)