A C D E G H I N O P R S T

A

ActionManager - Interface in org.phenotips.messaging

Performs actions on Connections, such as sending emails and handling access granting.

AnonymousCommunicationScriptService - Class in org.phenotips.messaging.script

Stores a connection between the owners of two matched patients, anonymously, to be used for email communication.

AnonymousCommunicationScriptService() - Constructor for class org.phenotips.messaging.script.AnonymousCommunicationScriptService

assemble(Serializable, Object) - Method in class org.phenotips.messaging.DocumentReferenceType

assemble(Serializable, Object) - Method in class org.phenotips.messaging.PatientReferenceType

C

Connection - Class in org.phenotips.messaging

Stores a connection between the owners of two matched patients, anonymously, to be used for email communication.

Connection() - Constructor for class org.phenotips.messaging.Connection

Default constructor used by Hibernate.

Connection(PatientSimilarityView) - Constructor for class org.phenotips.messaging.Connection

Constructor that copies the data from a patient pair.

ConnectionManager - Interface in org.phenotips.messaging

Creates and retrieves Connections.

D

deepCopy(Object) - Method in class org.phenotips.messaging.DocumentReferenceType

deepCopy(Object) - Method in class org.phenotips.messaging.PatientReferenceType

disassemble(Object) - Method in class org.phenotips.messaging.DocumentReferenceType

disassemble(Object) - Method in class org.phenotips.messaging.PatientReferenceType

DocumentReferenceType - Class in org.phenotips.messaging

Custom Hibernate type used for storing document references in a database.

DocumentReferenceType() - Constructor for class org.phenotips.messaging.DocumentReferenceType

E

equals(Object, Object) - Method in class org.phenotips.messaging.DocumentReferenceType

equals(Object, Object) - Method in class org.phenotips.messaging.PatientReferenceType

G

getConnection(PatientSimilarityView) - Method in interface org.phenotips.messaging.ConnectionManager

Search for an existing connection for the patient pair view; if one exists, return it, otherwise create, store and return a new connection, with the data from the passed patient pair view.

getConnectionById(Long) - Method in interface org.phenotips.messaging.ConnectionManager

Deprecated.

use ConnectionManager.getConnectionByToken(String) instead

getConnectionByToken(String) - Method in interface org.phenotips.messaging.ConnectionManager

Retrieve an existing connection from the storage.

getContactedUser() - Method in class org.phenotips.messaging.Connection

The target of the communication, the owner of the matched patient.

getId() - Method in class org.phenotips.messaging.Connection

Deprecated.

use Connection.getToken() instead

getInitiatingUser() - Method in class org.phenotips.messaging.Connection

The user that initiated the communication, one of the owners of the reference patient.

getReferencePatient() - Method in class org.phenotips.messaging.Connection

The reference patient, owned by the initiating user.

getTargetPatient() - Method in class org.phenotips.messaging.Connection

The matched patient, owned by the contacted user.

getToken() - Method in class org.phenotips.messaging.Connection

The unique, secure connection token is exposed, and is the only thing needed to retrieve back the full connection.

grantAccess(Connection) - Method in interface org.phenotips.messaging.ActionManager

Grant mutual view access on the two patients to the owners.

grantAccess(String) - Method in class org.phenotips.messaging.script.AnonymousCommunicationScriptService

Grant mutual view access on the two patients to the owners.

H

hashCode(Object) - Method in class org.phenotips.messaging.DocumentReferenceType

hashCode(Object) - Method in class org.phenotips.messaging.PatientReferenceType

I

isMutable() - Method in class org.phenotips.messaging.DocumentReferenceType

isMutable() - Method in class org.phenotips.messaging.PatientReferenceType

N

nullSafeGet(ResultSet, String[], Object) - Method in class org.phenotips.messaging.DocumentReferenceType

nullSafeGet(ResultSet, String[], Object) - Method in class org.phenotips.messaging.PatientReferenceType

nullSafeSet(PreparedStatement, Object, int) - Method in class org.phenotips.messaging.DocumentReferenceType

nullSafeSet(PreparedStatement, Object, int) - Method in class org.phenotips.messaging.PatientReferenceType

O

org.phenotips.messaging - package org.phenotips.messaging

org.phenotips.messaging.script - package org.phenotips.messaging.script

P

PatientReferenceType - Class in org.phenotips.messaging

Custom Hibernate type used for storing patient references in a database.

PatientReferenceType() - Constructor for class org.phenotips.messaging.PatientReferenceType

R

replace(Object, Object, Object) - Method in class org.phenotips.messaging.DocumentReferenceType

replace(Object, Object, Object) - Method in class org.phenotips.messaging.PatientReferenceType

returnedClass() - Method in class org.phenotips.messaging.DocumentReferenceType

returnedClass() - Method in class org.phenotips.messaging.PatientReferenceType

S

sendInitialMail(String, Map<String, Object>) - Method in class org.phenotips.messaging.script.AnonymousCommunicationScriptService

Send the initial email to the owner of the matched patient.

sendInitialMails(Connection, Map<String, Object>) - Method in interface org.phenotips.messaging.ActionManager

Send the initial email to the owner of the matched patient.

sendSuccessMail(Connection) - Method in interface org.phenotips.messaging.ActionManager

Send the followup email to the user requesting access.

setContactedUser(DocumentReference) - Method in class org.phenotips.messaging.Connection

Sets the contacted user.

setInitiatingUser(DocumentReference) - Method in class org.phenotips.messaging.Connection

Sets the initiating user.

setReferencePatient(Patient) - Method in class org.phenotips.messaging.Connection

Sets the reference patient.

setTargetPatient(Patient) - Method in class org.phenotips.messaging.Connection

Sets the matched patient.

sqlTypes() - Method in class org.phenotips.messaging.DocumentReferenceType

sqlTypes() - Method in class org.phenotips.messaging.PatientReferenceType

T

toString() - Method in class org.phenotips.messaging.Connection

A C D E G H I N O P R S T