// ------------------------------------------------------------------
// NOTICE file containing copyrights,
// in this case for PhenoTips - Family Studies - REST services
// ------------------------------------------------------------------

PhenoTips - Family Studies - REST services
Copyright 2011-2019 University of Toronto, Computational Biology Lab

This product includes/uses software developed by 'an unknown organization'
  - dexx (https://github.com/andrewoma/dexx)
  - Caffeine cache (https://github.com/ben-manes/caffeine)
  - FindBugs-jsr305 (http://findbugs.sourceforge.net/)
  - T-Digest (https://github.com/tdunning/t-digest)
  - gmetric4j (http://github.com/ganglia/gmetric4j)
  - Metrics Core (http://metrics.codahale.com/metrics-core/)
  - Ganglia Integration for Metrics (http://metrics.codahale.com/metrics-ganglia/)
  - Graphite Integration for Metrics (http://metrics.codahale.com/metrics-graphite/)
  - Metrics Integration for Jetty 9.1 and higher (http://metrics.codahale.com/metrics-jetty9/)
  - JVM Integration for Metrics (http://metrics.codahale.com/metrics-jvm/)
  - JavaBeans(TM) Activation Framework (http://java.sun.com/javase/technologies/desktop/javabeans/jaf/index.jsp)
  - javax.inject (http://code.google.com/p/atinject/)
  - Bean Validation API
  - StAX Utilities Project (http://java.net/projects/stax-utils/)
  - HtmlCleaner (http://htmlcleaner.sourceforge.net/)
  - zookeeper
  - Commons Compiler (http://docs.codehaus.org/display/JANINO/Home/commons-compiler)
  - Janino (http://docs.codehaus.org/display/JANINO/Home/janino)
  - JSON in Java (https://github.com/douglascrockford/JSON-java)
  - JAXB2 Commons - Fluent API Plugin (http://java.net/projects/jaxb2-commons/pages/fluent-api)
  - Noggit (http://github.com/yonik/noggit)
  - org.osgi.core
  - Restlet Core - API and Engine (http://restlet.org/org.restlet)
  - Restlet Extension - Servlet (http://www.restlet.org/org.restlet.ext.servlet)
  - Restlet Core (http://www.restlet.org/org.restlet)
  - Restlet Extension - Jackson (http://www.restlet.org/org.restlet.ext.jackson)
  - Restlet Extension - JAXB (http://www.restlet.org/org.restlet.ext.jaxb)
  - Restlet Extension - JAX-RS (http://www.restlet.org/org.restlet.ext.jaxrs)
  - Xerces2-j (https://xerces.apache.org/xerces2-j/)

This product includes/uses software developed by 'ANTLR' (http://www.antlr.org)
  - ANTLR 4 Runtime (http://www.antlr.org/antlr4-runtime)

This product includes/uses software developed by 'Apache Software Foundation' (http://www.apache.org)
  - Apache Log4j (http://logging.apache.org/log4j/1.2/)
  - Apache Hadoop Annotations
  - Apache Hadoop Auth
  - Apache Hadoop Common
  - Apache Hadoop HDFS

This product includes/uses software developed by 'Carrot Search s.c.' (http://www.carrotsearch.com)
  - HPPC Collections (http://labs.carrotsearch.com/hppc.html/hppc)

This product includes/uses software developed by 'Codehaus' (http://www.codehaus.org/)
  - Woodstox (http://woodstox.codehaus.org)

This product includes/uses software developed by 'FasterXML' (http://fasterxml.com)
  - Jackson (http://jackson.codehaus.org)
  - Data Mapper for Jackson (http://jackson.codehaus.org)

This product includes/uses software developed by 'FasterXML' (http://fasterxml.com/)
  - Jackson-annotations (http://github.com/FasterXML/jackson)
  - jackson-databind (http://github.com/FasterXML/jackson)
  - Jackson-dataformat-Smile (http://wiki.fasterxml.com/JacksonForSmile)

This product includes/uses software developed by 'fasterxml.com' (http://fasterxml.com)
  - Stax2 API (http://wiki.fasterxml.com/WoodstoxStax2)

This product includes/uses software developed by 'Google' (http://www.google.com/)
  - Protocol Buffers [Core] (https://developers.google.com/protocol-buffers/protobuf-java/)

This product includes/uses software developed by 'JDOM' (http://www.jdom.org)
  - JDOM (http://www.jdom.org)

This product includes/uses software developed by 'Joda.org' (http://www.joda.org)
  - Joda-Time (http://www.joda.org/joda-time/)

This product includes/uses software developed by 'Julian Hyde' (http://www.hydromatic.net)
  - eigenbase-properties (http://github.com/julianhyde/eigenbase-properties)

This product includes/uses software developed by 'LocationTech' (http://www.locationtech.org/)
  - Spatial4J (http://www.locationtech.org/projects/locationtech.spatial4j)

This product includes/uses software developed by 'ObjectWeb' (http://www.objectweb.org/)
  - ASM Commons (http://asm.objectweb.org/asm-commons/)

This product includes/uses software developed by 'Oracle' (http://www.oracle.com)
  - JavaMail API (compat) (http://kenai.com/projects/javamail/mail)

This product includes/uses software developed by 'QOS.ch' (http://www.qos.ch)
  - JCL 1.2 implemented over SLF4J (http://www.slf4j.org)
  - SLF4J API Module (http://www.slf4j.org)

This product includes/uses software developed by 'Sun Microsystems, Inc' (http://www.sun.com/)
  - jsr311-api (https://jsr311.dev.java.net)

This product includes/uses software developed by 'The Apache Software Foundation' (http://www.apache.org/)
  - Apache Commons BeanUtils (http://commons.apache.org/proper/commons-beanutils/)
  - Commons CLI (http://commons.apache.org/cli/)
  - Apache Commons Collections (http://commons.apache.org/collections/)
  - Apache Commons FileUpload (http://commons.apache.org/proper/commons-fileupload/)
  - Apache Calcite Avatica (http://calcite.apache.org/avatica/avatica-core)
  - Curator Client (http://curator.apache.org/curator-client)
  - Curator Framework (http://curator.apache.org/curator-framework)
  - Curator Recipes (http://curator.apache.org/curator-recipes)
  - htrace-core (http://incubator.apache.org/projects/htrace.html)
  - Apache HttpCore (http://hc.apache.org/httpcomponents-core-ga)
  - Apache HttpClient Mime (http://hc.apache.org/httpcomponents-client)
  - Apache Jena - Base Common Environment (http://jena.apache.org/jena-base/)
  - Apache Jena - Core (http://jena.apache.org/jena-core/)
  - Apache Jena - IRI (http://jena.apache.org/jena-iri/)
  - Apache Jena - Shadowed external libraries (http://jena.apache.org/jena-shaded-guava/)
  - Lucene Common Analyzers (http://lucene.apache.org/lucene-parent/lucene-analyzers-common)
  - Lucene Kuromoji Japanese Morphological Analyzer (http://lucene.apache.org/lucene-parent/lucene-analyzers-kuromoji)
  - Lucene Phonetic Filters (http://lucene.apache.org/lucene-parent/lucene-analyzers-phonetic)
  - Lucene Memory (http://lucene.apache.org/lucene-parent/lucene-backward-codecs)
  - Lucene Classification (http://lucene.apache.org/lucene-parent/lucene-classification)
  - Lucene codecs (http://lucene.apache.org/lucene-parent/lucene-codecs)
  - Lucene Core (http://lucene.apache.org/lucene-parent/lucene-core)
  - Lucene Expressions (http://lucene.apache.org/lucene-parent/lucene-expressions)
  - Lucene Grouping (http://lucene.apache.org/lucene-parent/lucene-grouping)
  - Lucene Highlighter (http://lucene.apache.org/lucene-parent/lucene-highlighter)
  - Lucene Join (http://lucene.apache.org/lucene-parent/lucene-join)
  - Lucene Memory (http://lucene.apache.org/lucene-parent/lucene-memory)
  - Lucene Miscellaneous (http://lucene.apache.org/lucene-parent/lucene-misc)
  - Lucene Queries (http://lucene.apache.org/lucene-parent/lucene-queries)
  - Lucene QueryParsers (http://lucene.apache.org/lucene-parent/lucene-queryparser)
  - Lucene Sandbox (http://lucene.apache.org/lucene-parent/lucene-sandbox)
  - Lucene Spatial Extras (http://lucene.apache.org/lucene-parent/lucene-spatial-extras)
  - Lucene Suggest (http://lucene.apache.org/lucene-parent/lucene-suggest)
  - Apache Solr Core (http://lucene.apache.org/solr-parent/solr-core)
  - Apache Solr Solrj (http://lucene.apache.org/solr-parent/solr-solrj)

This product includes/uses software developed by 'The Apache Software Foundation' (https://www.apache.org/)
  - Calcite Core (https://calcite.apache.org/calcite-core)
  - Calcite Linq4j (https://calcite.apache.org/calcite-linq4j)
  - Apache Commons CSV (http://commons.apache.org/proper/commons-csv/)
  - Apache Commons Lang (http://commons.apache.org/proper/commons-lang/)

This product includes/uses software developed by 'University of Toronto, Computational Biology Lab' (http://compbio.cs.toronto.edu/)
  - PhenoTips - Application configuration - Java APIs (http://phenotips.org/phenotips-components/application-configuration/application-configuration-api/)
  - PhenoTips - Component Manager Registry (http://phenotips.org/phenotips-components/phenotips-utilities/component-registry/)
  - PhenoTips - Entity access rules - Java APIs (http://phenotips.org/phenotips-components/entity-access-rules/entity-access-rules-api/)
  - PhenoTips - Family Studies - Java APIs (http://phenotips.org/phenotips-components/family-studies/family-studies-api/)
  - PhenoTips - OBO to Solr conversion (http://phenotips.org/phenotips-components/obo2solr/)
  - PhenoTips - Patient data - Java APIs (http://phenotips.org/phenotips-components/patient-data/patient-data-api/)
  - PhenoTips - Patient data - Default implementation for the Java APIs (http://phenotips.org/phenotips-components/patient-data/patient-data-default-impl/)
  - PhenoTips - Security - Authorization APIs (http://phenotips.org/phenotips-components/phenotips-security/phenotips-authorization/)
  - PhenoTips - Data model constants (http://phenotips.org/phenotips-components/phenotips-constants/)
  - PhenoTips - Entities - Java APIs (http://phenotips.org/phenotips-components/phenotips-entities/phenotips-entities-api/)
  - PhenoTips - Common code for REST services (http://phenotips.org/phenotips-components/phenotips-rest-commons/)
  - PhenoTips - Vocabularies - APIs (http://phenotips.org/phenotips-components/vocabularies/vocabularies-api/)
  - XWiki - Locks (http://phenotips.org/phenotips-components/xwiki-locks/)
  - XWiki Platform - Core - Users - API (http://phenotips.org/phenotips-components/xwiki-platform-users/xwiki-platform-users-api/)
  - XWiki Translation Manager (http://phenotips.org/phenotips-components/phenotips-utilities/xwiki-translation-manager/)

This product includes/uses software developed by 'Webtide' (http://webtide.com)
  - Jetty :: Continuation (http://www.eclipse.org/jetty)
  - Jetty :: Deployers (http://www.eclipse.org/jetty)
  - Jetty :: Http Utility (http://www.eclipse.org/jetty)
  - Jetty :: IO Utility (http://www.eclipse.org/jetty)
  - Jetty :: JMX Management (http://www.eclipse.org/jetty)
  - Jetty :: Rewrite Handler (http://www.eclipse.org/jetty)
  - Jetty :: Security (http://www.eclipse.org/jetty)
  - Jetty :: Server Core (http://www.eclipse.org/jetty)
  - Jetty :: Servlet Handling (http://www.eclipse.org/jetty)
  - Jetty :: Utility Servlets and Filters (http://www.eclipse.org/jetty)
  - Jetty :: Utilities (http://www.eclipse.org/jetty)
  - Jetty :: Webapp Application Support (http://www.eclipse.org/jetty)
  - Jetty :: XML utilities (http://www.eclipse.org/jetty)

This product includes/uses software developed by 'XWiki' (http://xwiki.org/)
  - XWiki Commons - Component - API (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-component-api:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-component/xwiki-commons-component-api)
  - XWiki Commons - Component - Default Implementation (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-component-default:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-component/xwiki-commons-component-default)
  - XWiki Commons - Component - Observation (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-component-observation:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-component/xwiki-commons-component-observation)
  - XWiki Commons - Configuration - API (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-configuration-api:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-configuration/xwiki-commons-configuration-api)
  - XWiki Commons - Diff Display API (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-diff-display:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-diff/xwiki-commons-diff-display)
  - XWiki Commons - Filter - API (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-filter-api:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-filter/xwiki-commons-filter-api)
  - XWiki Commons - Observation - API (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-observation-api:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-observation/xwiki-commons-observation-api)
  - XWiki Commons - Properties (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-properties:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-properties)
  - XWiki Commons - Script (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-script:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-script)
  - XWiki Commons - Stability (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-stability:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-stability)
  - XWiki Commons - Text (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-text:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-text)
  - XWiki Commons - XML (http://extensions.xwiki.org?id=org.xwiki.commons:xwiki-commons-xml:7.4.6:::/xwiki-commons-pom/xwiki-commons-core/xwiki-commons-xml)
  - XWiki Platform - Bridge (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-bridge:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-bridge)
  - XWiki Platform - Cache - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-cache-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-cache/xwiki-platform-cache-api)
  - XWiki Platform - Component - Wiki Components (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-component-wiki:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-component/xwiki-platform-component-wiki)
  - XWiki Platform - Containers - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-container-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-containers/xwiki-platform-container-api)
  - XWiki Platform - Containers - Servlet (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-container-servlet:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-containers/xwiki-platform-container-servlet)
  - XWiki Platform - Extension - Distribution (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-extension-distribution:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-extension/xwiki-platform-extension-distribution)
  - XWiki Platform - Extension - Handler - XAR (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-extension-handler-xar:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-extension/xwiki-platform-extension-handlers/xwiki-platform-extension-handler-xar)
  - XWiki Platform - Extension - Script (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-extension-script:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-extension/xwiki-platform-extension-script)
  - XWiki Platform - Filter - Event - User (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-filter-event-user:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-filter/xwiki-platform-filter-events/xwiki-platform-filter-event-user)
  - XWiki Platform - Filter - Instance - Oldcore (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-filter-instance-oldcore:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-filter/xwiki-platform-filter-instance/xwiki-platform-filter-instance-oldcore)
  - XWiki Platform - Flavor - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-flavor-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-flavor/xwiki-platform-flavor-api)
  - XWiki Platform - Localization - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-localization-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-localization/xwiki-platform-localization-api)
  - XWiki Platform - Model (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-model:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-model)
  - XWiki Platform - Query - Manager (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-query-manager:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-query/xwiki-platform-query-manager)
  - XWiki Platform - REST - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-rest-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-rest/xwiki-platform-rest-api)
  - XWiki Platform - REST - Model (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-rest-model:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-rest/xwiki-platform-rest-model)
  - XWiki Platform - REST - Server (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-rest-server:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-rest/xwiki-platform-rest-server)
  - XWiki Platform - Security - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-security-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-security/xwiki-platform-security-api)
  - XWiki Platform - UI Extension Extension - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-uiextension-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-uiextension/xwiki-platform-uiextension-api)
  - XWiki Platform - Wiki - User - API (http://extensions.xwiki.org?id=org.xwiki.platform:xwiki-platform-wiki-user-api:7.4.6:::/xwiki-commons-pom/xwiki-platform/xwiki-platform-core/xwiki-platform-wiki/xwiki-platform-wiki-user/xwiki-platform-wiki-user-api)
  - XWiki Rendering - Api (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-api:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-api)
  - XWiki Rendering - Syntax - Plain (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-syntax-plain:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-syntaxes/xwiki-rendering-syntax-plain)
  - XWiki Rendering - Syntax - WikiModel Bridge (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-syntax-wikimodel:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-syntaxes/xwiki-rendering-syntax-wikimodel)
  - XWiki Rendering - Syntax - XDOM+XML Current (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-syntax-xdomxmlcurrent:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-syntaxes/xwiki-rendering-syntax-xdomxmlcurrent)
  - XWiki Rendering - Syntax - XHTML (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-syntax-xhtml:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-syntaxes/xwiki-rendering-syntax-xhtml)
  - XWiki Rendering - WikiModel (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-wikimodel:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-wikimodel)
  - XWiki Rendering - XML (http://extensions.xwiki.org?id=org.xwiki.rendering:xwiki-rendering-xml:7.4.6:::/xwiki-commons-pom/xwiki-rendering/xwiki-rendering-xml)


