4.0.0 org.phenotips phenotips-distribution 1.0-milestone-13 phenotips-rpm rpm PhenoTips - RPM Distribution Distribution containing the PhenoTips application deployed under Tomcat, with HSQLDB for storage, as a RedHat (.rpm) package. ${project.build.directory}/ptwar ${project.build.directory}/phenotips ${data.path}/data /var/lib/phenotips/data ${project.groupId} phenotips-war ${project.version} war ${project.groupId} database-zip ${project.version} zip ${project.groupId} solr-configuration ${project.version} jar true org.apache.maven.plugins maven-dependency-plugin unzip-phenotips process-resources unpack ${project.groupId} phenotips-war ${project.version} war **\/xwiki.cfg,**/xwiki.properties,**/hibernate.cfg.xml ${ptwar.path} org.apache.maven.plugins maven-remote-resources-plugin xwiki-configuration-resources xwiki-platform-tool-configuration-resources process org.xwiki.platform:xwiki-platform-tool-configuration-resources:${xwiki.version} jdbc:hsqldb:file:${environment.permanentDirectory}/database/xwiki_db;shutdown=true;hsqldb.cache_size=50000;hsqldb.script_format=3;hsqldb.nio_max_size=512;hsqldb.lob_file_scale=16;hsqldb.default_table_type=cached;hsqldb.tx=mvcc sa org.hsqldb.jdbcDriver org.hibernate.dialect.HSQLDialect xwiki.hbm.xml feeds.hbm.xml activitystream.hbm.xml \ com.xpn.xwiki.monitor.api.MonitorPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.JsResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssSkinFileExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.CssResourceSkinExtensionPlugin,\ com.xpn.xwiki.plugin.skinx.LinkExtensionPlugin,\ com.xpn.xwiki.plugin.mail.MailPlugin,\ com.xpn.xwiki.plugin.packaging.PackagePlugin,\ com.xpn.xwiki.plugin.svg.SVGPlugin,\ com.xpn.xwiki.plugin.fileupload.FileUploadPlugin,\ com.xpn.xwiki.plugin.image.ImagePlugin,\ com.xpn.xwiki.plugin.zipexplorer.ZipExplorerPlugin,\ com.xpn.xwiki.plugin.lucene.LucenePlugin,\ com.xpn.xwiki.plugin.diff.DiffPlugin,\ com.xpn.xwiki.plugin.rightsmanager.RightsManagerPlugin,\ com.xpn.xwiki.plugin.jodatime.JodaTimePlugin,\ com.xpn.xwiki.plugin.scheduler.SchedulerPlugin,\ com.xpn.xwiki.plugin.mailsender.MailSenderPlugin,\ com.xpn.xwiki.plugin.activitystream.plugin.ActivityStreamPlugin, \ com.xpn.xwiki.plugin.watchlist.WatchListPlugin, \ com.xpn.xwiki.plugin.tag.TagPlugin 0 0 0 colibri colibri UTF-8 xwiki.plugin.watchlist.automaticwatch=none xwiki.authentication.group.allgroupimplicit=1 xwiki.section.edit=0 xwiki.backlinks=0 xwiki.showviewaction=0 xwiki.defaultweb=data xwiki.usedefaultweb=1 xwiki.usedefaultaction=0 xwiki.monitor=0 /var/lib/phenotips/data/ model.reference.default.space=data extension.repositories=maven-xwiki:maven:http://nexus.xwiki.org/nexus/content/groups/public extension.repositories=maven-phenotips:maven:http://nexus.cs.toronto.edu/nexus/content/repositories/releases/ extension.repositories=extensions.xwiki.org:xwiki:http://extensions.xwiki.org/xwiki/rest/ org.codehaus.mojo rpm-maven-plugin 2.1-alpha-4 true phenotips

The PhenoTips server packaged for Tomcat with an embedded HSQLDB database for data storage

PhenoTips is an open source software tool for collecting and analyzing phenotypic information for patients with genetic disorders. The user interface closely mirrors clinician workflows so as to facilitate the recording of observations made during the patient encounter. This easy-to-use front-end, compatible with any device that runs a Web browser, is coupled with with a standardized database back-end where phenotypic information is represented using the Human Phenotype Ontology (HPO). Collected data include demographics, medical history, family history, physical and laboratory measurements, physical findings, and free-form notes. In addition to data collection, PhenoTips automatically analyzes a wide range of measurements and plots live the corresponding growth curves. It also supports accurate diagnosis based on the entered data, and can suggest additional clinical investigations that can improve the diagnosis. Computational Biology Lab, University of Toronto (devs@phenotips.org) LGPL 2.1 Applications/Science src/main/resources/phenotips.gif /usr/local 750 644 tomcat tomcat java >= 0:1.6.0 tomcat unzip bc /var/lib/phenotips/webapp/ true ${ptwar.path} /var/lib/phenotips/webapp/WEB-INF/ noreplace false ${project.build.outputDirectory}/ xwiki.cfg xwiki.properties hibernate.cfg.xml /var/lib/phenotips/next/ ${project.groupId}:database-zip ${project.groupId}:solr-configuration /etc/tomcat/Catalina/localhost/ false ${project.build.outputDirectory}/context.xml phenotips.xml src/main/scripts/preinstall utf-8 src/main/scripts/postinstall utf-8 src/main/scripts/postremove utf-8