4.0.0 org.phenotips phenotips-parent 1.0-milestone-9 pom PhenoTips - Parent POM PhenoTips is a software tool providing an easy-to-use Web interface and standardized database back-end for collecting clinical symptoms and physical findings observed in patients with genetic disorders. http://phenotips.org/ 2011 LGPL 2.1 http://www.gnu.org/licenses/old-licenses/lgpl-2.1.html repo scm:git:git://github.com/phenotips/phenotips.git scm:git:git@github.com:phenotips/phenotips.git https://github.com/phenotips/phenotips.git/tree/master/ phenotips-1.0-milestone-9 University of Toronto, Computational Biology Lab http://compbio.cs.toronto.edu/ nexus.cs.toronto.edu dav:http://nexus.cs.toronto.edu/nexus/content/sites/site/${project.groupId}/${project.artifactId}/${project.version} nexus.cs.toronto.edu Maven2 Remote Repository for Releases http://nexus.cs.toronto.edu/nexus/content/repositories/releases nexus.cs.toronto.edu Maven2 Development Repository for Snapshots http://nexus.cs.toronto.edu/nexus/content/repositories/snapshots uoft-releases UofT Releases repository http://nexus.cs.toronto.edu/nexus/content/repositories/releases/ true fail false fail uoft-snapshots UofT Releases repository http://nexus.cs.toronto.edu/nexus/content/repositories/snapshots/ false fail fail uoft-externals UofT external repositories mirror http://nexus.cs.toronto.edu/nexus/content/groups/public/ true false uoft-externals UofT external repositories mirror http://nexus.cs.toronto.edu/nexus/content/groups/public/ true false UTF-8 5.2-milestone-2 1.7.5 false false false 1.00 org.apache.commons commons-lang3 3.1 org.slf4j slf4j-api ${slf4j.version} javax.servlet servlet-api 2.4 provided commons-httpclient commons-httpclient 3.1 net.sf.json-lib json-lib jdk15 2.4 install org.apache.maven.wagon wagon-webdav-jackrabbit 2.2 maven-compiler-plugin -Xlint:all true true org.apache.maven.plugins maven-checkstyle-plugin com.mycila.maven-license-plugin maven-license-plugin org.codehaus.mojo clirr-maven-plugin **/similarity/PatientSimilarityView 7006 org.phenotips.data.similarity.AccessType getAccess() org.phenotips.data.permissions.AccessLevel **/ontology/*Service 7012 long size() **/ontology/OntologyService 7012 long count(java.util.Map) **/ontology/OntologyService 7012 long getDistance(java.lang.String, java.lang.String) **/ontology/OntologyService 7012 long getDistance(org.phenotips.ontology.OntologyTerm, org.phenotips.ontology.OntologyTerm) **/ontology/OntologyTerm 7012 long getDistanceTo(org.phenotips.ontology.OntologyTerm) **/internal/** **/test/** **/AccessType org.apache.maven.plugins maven-remote-resources-plugin xwiki-license-resources process org.xwiki.commons:xwiki-commons-tool-license-resources:${xwiki.version} org.jacoco jacoco-maven-plugin 0.6.3.201306030806 jacoco-prepare prepare-agent jacoco-check check INSTRUCTION ${coverage.instructionRatio} org.apache.maven.plugins maven-enforcer-plugin 1.1 org.xwiki.commons xwiki-commons-tool-enforcer-dependencies ${xwiki.version} enforce-plugins enforce Best Practice is to always define plugin versions! false false false enforce-commons-lang3 enforce false Best practice is to use Commons Lang 3.x commons-lang:commons-lang enforce-no-legacy-dependencies enforce true Don't depend on a XWiki Legacy module! .*xwiki.*:.*-legacy-.* ${enforcer.skip} org.apache.maven.plugins maven-checkstyle-plugin 2.9.1 org.xwiki.commons xwiki-commons-tool-verification-resources ${xwiki.version} true ${checkstyle.skip} checkstyle.xml check com.mycila.maven-license-plugin maven-license-plugin 1.9.0 ${license.skip}

license.txt

true license-xml-definition.xml license-script-definition.xml license-batch-definition.xml SLASHSTAR_STYLE SLASHSTAR_STYLE src/**/*.java src/**/*.xml src/**/*.bat src/**/*.sh pom.xml **/components.txt **/component-overrides.txt **/it/**/goals.txt **/goal.txt false org.xwiki.commons xwiki-commons-tool-verification-resources ${xwiki.version} check org.apache.maven.plugins maven-resources-plugin 2.6 org.apache.maven.plugins maven-remote-resources-plugin 1.3 org.apache.maven.plugins maven-release-plugin 2.4 clean install deploy forked-path true true false org.apache.maven.plugins maven-clean-plugin 2.5 org.apache.maven.plugins maven-source-plugin 2.1.2 org.apache.maven.plugins maven-plugin-plugin 2.9 org.apache.maven.plugins maven-install-plugin 2.4 org.apache.maven.plugins maven-compiler-plugin 2.5.1 1.6 1.6 org.apache.maven.plugins maven-surefire-plugin 2.12.3 **/*Test.class org.apache.maven.plugins maven-jar-plugin 2.4 ${project.groupId}:${project.artifactId} org.apache.maven.plugins maven-assembly-plugin 2.4 org.apache.maven.plugins maven-dependency-plugin 2.7 org.apache.maven.plugins maven-war-plugin 2.2 ${project.groupId}:${project.artifactId} org.apache.maven.plugins maven-deploy-plugin 2.7 org.apache.maven.wagon wagon-webdav-jackrabbit 2.2 org.apache.maven.plugins maven-project-info-reports-plugin 2.4 org.codehaus.mojo clirr-maven-plugin 2.5 clirr-check check ${clirr.previous.version} ${clirr.skip} **/internal/** org.apache.maven.plugins maven-gpg-plugin 1.4 org.apache.maven.plugins maven-javadoc-plugin 2.8.1 *.internal.* 300m org.apache.maven.plugins maven-site-plugin 3.2 org.apache.maven.wagon wagon-webdav-jackrabbit 2.2 org.apache.maven.plugins maven-project-info-reports-plugin 2.4 false summary index dependencies dependency-convergence mailing-list issue-tracking scm org.apache.maven.plugins maven-javadoc-plugin 2.8 *.internal.* 300m javadoc org.xwiki.commons xwiki-commons-tool-xar-plugin ${xwiki.version} release performRelease true org.apache.maven.plugins maven-source-plugin attach-sources jar org.apache.maven.plugins maven-javadoc-plugin attach-javadocs jar org.apache.maven.plugins maven-gpg-plugin sign-artifacts verify sign true components resources pedigree distribution