org.phenotips.tools

Class PhenotypeMappingService

java.lang.Object

org.phenotips.tools.PhenotypeMappingService

All Implemented Interfaces:

org.xwiki.component.phase.Initializable, org.xwiki.observation.EventListener, org.xwiki.script.service.ScriptService

@Component(roles=org.xwiki.script.service.ScriptService.class)
@Named(value="phenotypeMapping")
@Singleton
public class PhenotypeMappingService
extends Object
implements org.xwiki.script.service.ScriptService, org.xwiki.observation.EventListener, org.xwiki.component.phase.Initializable

Provides access to the phenotype mappings configured for the current space. The field mappings are defined as a JSON object contained in a document. The name of that document must be configured in the "phenotypeMapping" field of a "DBConfigurationClass" object attached to the homepage (WebHome) of the current space.

Since:

1.0

Version:

$Id: 319744404e97d511c551a67f7d73fbdea5a0e127 $

Constructor Summary

Constructors

Constructor and Description
PhenotypeMappingService()

Method Summary

Methods

Modifier and Type	Method and Description
Object	get(String name) Generic configuration getter.
List<org.xwiki.observation.event.Event>	getEvents()
Object	getExtraMessages() Get the configuration for the "extraMessages" pseudo-property.
Object	getFamilyHistory() Get the configuration for the "family_history" field.
String	getName()
Object	getNegativePhenotype() Get the configuration for the "negative_phenotype" field.
Object	getPhenotype() Get the configuration for the "phenotype" field.
Object	getPrenatalPhenotype() Get the configuration for the "prenatal_phenotype" field.
void	initialize()
void	onEvent(org.xwiki.observation.event.Event event, Object source, Object data)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenotypeMappingService

public PhenotypeMappingService()

Method Detail

initialize

public void initialize()
                throws org.xwiki.component.phase.InitializationException

Specified by:

initialize in interface org.xwiki.component.phase.Initializable

Throws:

org.xwiki.component.phase.InitializationException

getName

public String getName()

Specified by:

getName in interface org.xwiki.observation.EventListener

getEvents

public List<org.xwiki.observation.event.Event> getEvents()

Specified by:

getEvents in interface org.xwiki.observation.EventListener

onEvent

public void onEvent(org.xwiki.observation.event.Event event,
           Object source,
           Object data)

Specified by:

onEvent in interface org.xwiki.observation.EventListener

getPhenotype

public Object getPhenotype()

Get the configuration for the "phenotype" field.

Returns:

configuration object, should be a Map

getPrenatalPhenotype

public Object getPrenatalPhenotype()

Get the configuration for the "prenatal_phenotype" field.

Returns:

configuration object, should be a Map

getNegativePhenotype

public Object getNegativePhenotype()

Get the configuration for the "negative_phenotype" field.

Returns:

configuration object, should be a Map

getFamilyHistory

public Object getFamilyHistory()

Get the configuration for the "family_history" field.

Returns:

configuration object, should be a Map

getExtraMessages

public Object getExtraMessages()

Get the configuration for the "extraMessages" pseudo-property.

Returns:

configuration object, should be a Map

get

public Object get(String name)

Generic configuration getter.

Parameters:

name - the name of the configuration to return

Returns:

configuration object, should be a Map