A C D E F G I N O P R S T U V Y

A

AbstractFormElement - Class in org.phenotips.tools

Base class for implementing a FormElement.

addCustomElement(FormElement) - Method in class org.phenotips.tools.FormSection

addElement(FormElement) - Method in class org.phenotips.tools.FormGroup

C

clear() - Method in class org.phenotips.tools.PhenotypeDisplayTools

D

display(DisplayMode, String[]) - Method in class org.phenotips.tools.FormConditionalSubsection

display(DisplayMode, String[]) - Method in interface org.phenotips.tools.FormElement

display(DisplayMode, String[]) - Method in class org.phenotips.tools.FormField

display(DisplayMode, String[]) - Method in class org.phenotips.tools.FormGroup

display(DisplayMode, String[]) - Method in class org.phenotips.tools.FormSection

display(DisplayMode, String[]) - Method in class org.phenotips.tools.FormSubsection

display(Collection<Map<String, ?>>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

display() - Method in class org.phenotips.tools.PropertyDisplayer

DisplayMode - Enum in org.phenotips.tools

Different ways of displaying form elements.

E

elements - Variable in class org.phenotips.tools.FormGroup

F

fieldNames - Variable in class org.phenotips.tools.PropertyDisplayer

FormConditionalSubsection - Class in org.phenotips.tools

FormData - Class in org.phenotips.tools

FormData() - Constructor for class org.phenotips.tools.FormData

FormElement - Interface in org.phenotips.tools

FormField - Class in org.phenotips.tools

FormGroup - Class in org.phenotips.tools

FormSection - Class in org.phenotips.tools

FormSubsection - Class in org.phenotips.tools

G

generateFormField(String[]) - Method in class org.phenotips.tools.FormField

generateSelection(String[]) - Method in class org.phenotips.tools.FormField

get(String) - Static method in enum org.phenotips.tools.DisplayMode

get(String) - Method in class org.phenotips.tools.PhenotypeMappingService

Generic configuration getter.

getCategories() - Method in class org.phenotips.tools.FormSection

getCustomCategories() - Method in class org.phenotips.tools.FormData

getCustomElements() - Method in class org.phenotips.tools.FormSection

getCustomNegativeCategories() - Method in class org.phenotips.tools.FormData

getDocument() - Method in class org.phenotips.tools.FormData

getEvents() - Method in class org.phenotips.tools.PhenotypeMappingService

getExtraMessages() - Method in class org.phenotips.tools.PhenotypeMappingService

Get the configuration for the "extraMessages" pseudo-property.

getFamilyHistory() - Method in class org.phenotips.tools.PhenotypeMappingService

Get the configuration for the "family_history" field.

getMode() - Method in class org.phenotips.tools.FormData

getName() - Method in class org.phenotips.tools.PhenotypeMappingService

getNegativeFieldName() - Method in class org.phenotips.tools.FormData

getNegativePhenotype() - Method in class org.phenotips.tools.PhenotypeMappingService

Get the configuration for the "negative_phenotype" field.

getNegativePropertyName() - Method in class org.phenotips.tools.FormData

getPhenotype() - Method in class org.phenotips.tools.PhenotypeMappingService

Get the configuration for the "phenotype" field.

getPositiveFieldName() - Method in class org.phenotips.tools.FormData

getPositivePropertyName() - Method in class org.phenotips.tools.FormData

getPrenatalPhenotype() - Method in class org.phenotips.tools.PhenotypeMappingService

Get the configuration for the "prenatal_phenotype" field.

getPropertyName() - Method in class org.phenotips.tools.FormSection

getSelectedNegativeValues() - Method in class org.phenotips.tools.FormData

getSelectedValues() - Method in class org.phenotips.tools.FormData

getTitle() - Method in class org.phenotips.tools.AbstractFormElement

getTitle() - Method in interface org.phenotips.tools.FormElement

getTitle() - Method in class org.phenotips.tools.FormSection

getTitle() - Method in class org.phenotips.tools.FormSubsection

I

INDEXED_CATEGORY_KEY - Static variable in class org.phenotips.tools.PropertyDisplayer

initialize() - Method in class org.phenotips.tools.PhenotypeMappingService

N

NO - Static variable in interface org.phenotips.tools.FormElement

O

onEvent(Event, Object, Object) - Method in class org.phenotips.tools.PhenotypeMappingService

ontologyService - Variable in class org.phenotips.tools.PropertyDisplayer

org.phenotips.tools - package org.phenotips.tools

P

PhenotypeDisplayTools - Class in org.phenotips.tools

Display lists of phenotype properties.

PhenotypeDisplayTools() - Constructor for class org.phenotips.tools.PhenotypeDisplayTools

PhenotypeMappingService - Class in org.phenotips.tools

Provides access to the phenotype mappings configured for the current space.

PhenotypeMappingService() - Constructor for class org.phenotips.tools.PhenotypeMappingService

PropertyDisplayer - Class in org.phenotips.tools

propertyName - Variable in class org.phenotips.tools.PropertyDisplayer

R

replaceOtherWithTopSections(Collection<Map<String, ?>>) - Method in class org.phenotips.tools.PropertyDisplayer

Adds top sections (direct children of HP:0000118) to a copy of the existing templates list, if those are not present.

S

setCustomCategories(Map<String, List<String>>) - Method in class org.phenotips.tools.FormData

setCustomCategories(Map<String, List<String>>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setCustomCategories(Map<String, List<String>>, Map<String, List<String>>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setCustomElements(FormGroup) - Method in class org.phenotips.tools.FormSection

setCustomNegativeCategories(Map<String, List<String>>) - Method in class org.phenotips.tools.FormData

setDocument(Document) - Method in class org.phenotips.tools.FormData

setDocument(Document) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setMessageMap(Map<String, String>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setMode(DisplayMode) - Method in class org.phenotips.tools.FormData

setMode(String) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setNegativeFieldName(String) - Method in class org.phenotips.tools.FormData

setNegativePropertyName(String) - Method in class org.phenotips.tools.FormData

setPositiveFieldName(String) - Method in class org.phenotips.tools.FormData

setPositivePropertyName(String) - Method in class org.phenotips.tools.FormData

setSelectedNegativeValues(Collection<String>) - Method in class org.phenotips.tools.FormData

setSelectedValues(Collection<String>) - Method in class org.phenotips.tools.FormData

setSelectedValues(Collection<String>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

setSelectedValues(Collection<String>, Collection<String>) - Method in class org.phenotips.tools.PhenotypeDisplayTools

T

title - Variable in class org.phenotips.tools.AbstractFormElement

See AbstractFormElement.getTitle().

toString() - Method in class org.phenotips.tools.FormField

U

use(String, String) - Method in class org.phenotips.tools.PhenotypeDisplayTools

use(String, String, String) - Method in class org.phenotips.tools.PhenotypeDisplayTools

V

valueOf(String) - Static method in enum org.phenotips.tools.DisplayMode

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.phenotips.tools.DisplayMode

Returns an array containing the constants of this enum type, in the order they are declared.

Y

YES - Static variable in interface org.phenotips.tools.FormElement

A C D E F G I N O P R S T U V Y