<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<parent>
		<groupId>org.molgenis</groupId>
		<artifactId>molgenis</artifactId>
		<version>1.12.1</version>
	</parent>
	<artifactId>molgenis-data-annotators</artifactId>
	<packaging>jar</packaging>

	<dependencies>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-csv</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-data-vcf</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-core</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.molgenis</groupId>
			<artifactId>molgenis-core-ui</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-context-support</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-webmvc</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.httpcomponents</groupId>
			<artifactId>httpclient</artifactId>
			<version>4.2.1</version>
		</dependency>
		<dependency>
			<groupId>org.utgenome.thirdparty</groupId>
			<artifactId>picard</artifactId>
			<version>1.102.0</version>
		</dependency>
		<dependency>
			<groupId>org.json</groupId>
			<artifactId>json</artifactId>
			<version>20141113</version>
		</dependency>
		<dependency>
			<groupId>net.sf.jopt-simple</groupId>
			<artifactId>jopt-simple</artifactId>
			<version>4.9</version>
		</dependency>
	</dependencies>

	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-failsafe-plugin</artifactId>
			</plugin>
			<plugin>
				<artifactId>maven-assembly-plugin</artifactId>
				<configuration>
					<archive>
						<manifest>
							<mainClass>org.molgenis.data.annotation.cmd.CmdLineAnnotator</mainClass>
							<addDefaultImplementationEntries>
              					true
            				</addDefaultImplementationEntries>
						</manifest>
					</archive>
					<descriptorRefs>
						<descriptorRef>jar-with-dependencies</descriptorRef>
					</descriptorRefs>
					<finalName>CmdLineAnnotator</finalName>
					<appendAssemblyId>false</appendAssemblyId>
					<skipAssembly>${skip.delivery}</skipAssembly>
				</configuration>
				<executions>
					<execution>
						<id>make-assembly</id> <!-- this is used for inheritance merges -->
						<phase>package</phase> <!-- bind to the packaging phase -->
						<goals>
							<goal>single</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>

</project>